CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.2027 rna-evm.model.Chr1.2027 Chr1 63968710 63971237 PREDICTED: Alpha-ketoglutarate-dependent taurine dioxygenase GO:0016491;GO:0055114 K06912
gene-evm.TU.Chr1.2028 rna-evm.model.Chr1.2028 Chr1 63974115 63974712 uncharacterized protein nan K10804
gene-evm.TU.Chr1.2029 rna-evm.model.Chr1.2029 Chr1 63984931 64016294 PREDICTED: Cadherin EGF LAG seven-pass G-type receptor 3 GO:0005509;GO:0007156;GO:0016020;GO:0098609 K16507
gene-evm.TU.Chr1.203 rna-evm.model.Chr1.203 Chr1 6301546 6331700 PREDICTED: Coiled-coil domain-containing protein 138 nan K10421
gene-evm.TU.Chr1.2030 rna-evm.model.Chr1.2030 Chr1 64132746 64190637 uncharacterized protein nan nan
gene-evm.TU.Chr1.2031 rna-evm.model.Chr1.2031 Chr1 64400586 64421225 PREDICTED: 60 kDa SS-A/Ro ribonucleoprotein GO:0003723 K11089
gene-evm.TU.Chr1.2034 rna-evm.model.Chr1.2034 Chr1 64505055 64508729 PREDICTED: ganglioside GM2 activator GO:0006689;GO:0008047 K12383
gene-evm.TU.Chr1.2035 rna-evm.model.Chr1.2035 Chr1 64522118 64534042 PREDICTED: Ganglioside GM2 activator GO:0006689;GO:0008047 K12383
gene-evm.TU.Chr1.2036 rna-evm.model.Chr1.2036 Chr1 64535560 64538803 PREDICTED: ganglioside GM2 activator GO:0006689;GO:0008047 K12383
gene-evm.TU.Chr1.2037 rna-evm.model.Chr1.2037 Chr1 64541536 64561906 uncharacterized protein GO:0006689;GO:0008047 K12383

For more detailed data, you can explore the Download section to access the full dataset.