CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr14.173 rna-evm.model.Chr14.173 Chr14 5779824 5782492 PREDICTED: Protein YNG1 GO:0008270 K11319
gene-evm.TU.Chr14.1732 rna-evm.model.Chr14.1732 Chr14 52338557 52342530 uncharacterized protein nan K24416
gene-evm.TU.Chr14.174 rna-evm.model.Chr14.174 Chr14 5783226 5785504 PREDICTED: THAP domain-containing protein 11 GO:0003676 K23222
gene-evm.TU.Chr14.175 rna-evm.model.Chr14.175 Chr14 5790259 5817715 PREDICTED: Ras-specific guanine nucleotide-releasing factor RalGPS2 GO:0005085;GO:0007264 K24023
gene-evm.TU.Chr14.176 rna-evm.model.Chr14.176 Chr14 5826674 5837018 PREDICTED: Arylsulfatase J GO:0008484 K12375
gene-evm.TU.Chr14.1763 rna-evm.model.Chr14.1763 Chr14 52392731 52404493 PREDICTED: L-proline trans-4-hydroxylase nan K21615
gene-evm.TU.Chr14.1764 rna-evm.model.Chr14.1764 Chr14 52404672 52411174 PREDICTED: Malate/(S)-sulfolactate dehydrogenase GO:0016491;GO:0055114 K05884
gene-evm.TU.Chr14.1766 rna-evm.model.Chr14.1766 Chr14 52431287 52432967 PREDICTED: BTB/POZ domain-containing protein KCTD1/15 nan K04763
gene-evm.TU.Chr14.1770 rna-evm.model.Chr14.1770 Chr14 52488665 52489243 uncharacterized protein nan nan
gene-evm.TU.Chr14.1772 rna-evm.model.Chr14.1772 Chr14 52548529 52559864 PREDICTED: Tripartite motif-containing protein 2 nan K12026

For more detailed data, you can explore the Download section to access the full dataset.