CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr14.1686 rna-evm.model.Chr14.1686 Chr14 51679724 51702318 PREDICTED: Hormone receptor 4 GO:0003700;GO:0005634;GO:0006355;GO:0008270;GO:0043565 K09185
gene-evm.TU.Chr14.1687 rna-evm.model.Chr14.1687 Chr14 51707521 51721796 PREDICTED: Anti-sigma-I factor RsgI6 GO:0004553;GO:0005975;GO:0016798 K01181
gene-evm.TU.Chr14.1688 rna-evm.model.Chr14.1688 Chr14 51730334 51740394 PREDICTED: Methyltransferase-like protein 24 nan K16381
gene-evm.TU.Chr14.1689 rna-evm.model.Chr14.1689 Chr14 51743742 51750856 PREDICTED: 17-beta-hydroxysteroid dehydrogenase 14 nan K18009
gene-evm.TU.Chr14.1690 rna-evm.model.Chr14.1690 Chr14 51757269 51773248 PREDICTED: 17-beta-hydroxysteroid dehydrogenase 14 nan K00059
gene-evm.TU.Chr14.1691 rna-evm.model.Chr14.1691 Chr14 51784700 51801155 PREDICTED: Sushi, von Willebrand factor type A, EGF and pentraxin domain-containing protein 1 GO:0005509 K24469
gene-evm.TU.Chr14.1692 rna-evm.model.Chr14.1692 Chr14 51803436 51853445 PREDICTED: Sushi, von Willebrand factor type A, EGF and pentraxin domain-containing protein 1 GO:0005509 K24468
gene-evm.TU.Chr14.1693 rna-evm.model.Chr14.1693 Chr14 51863356 51872269 PREDICTED: 17-beta-hydroxysteroid dehydrogenase 14 nan K18009
gene-evm.TU.Chr14.1694 rna-evm.model.Chr14.1694 Chr14 51875070 51974963 PREDICTED: Sushi repeat-containing protein SRPX2 GO:0005509 K24469
gene-evm.TU.Chr14.1695 rna-evm.model.Chr14.1695 Chr14 51979331 51984504 PREDICTED: Sushi, nidogen and EGF-like domain-containing protein 1 GO:0005509 K24469

For more detailed data, you can explore the Download section to access the full dataset.