CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr14.1773 rna-evm.model.Chr14.1773 Chr14 52668131 52671338 PREDICTED: Tripartite motif-containing protein 2 nan K12031
gene-evm.TU.Chr14.1775 rna-evm.model.Chr14.1775 Chr14 52692103 52714983 PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp4 GO:0005515 K12662
gene-evm.TU.Chr14.1776 rna-evm.model.Chr14.1776.1 Chr14 52724227 52759599 PREDICTED: Death domain-associated protein 6 nan K02308
gene-evm.TU.Chr14.1777 rna-evm.model.Chr14.1777 Chr14 52763501 52768781 PREDICTED: 60S ribosomal protein L28 GO:0003735;GO:0005840;GO:0006412 K02903
gene-evm.TU.Chr14.1778 rna-evm.model.Chr14.1778 Chr14 52821301 52870239 PREDICTED: CCN family member 2 GO:0005515;GO:0005520;GO:0005576 K06827
gene-evm.TU.Chr14.178 rna-evm.model.Chr14.178 Chr14 5854511 5861198 PREDICTED: DNA repair protein XRCC2 GO:0000724;GO:0003677;GO:0005524;GO:0005657;GO:0006281;GO:0008094;GO:0033063 K10879
gene-evm.TU.Chr14.1781 rna-evm.model.Chr14.1781 Chr14 53124668 53147859 PREDICTED: Retinoic acid receptor RXR GO:0003677;GO:0003700;GO:0003707;GO:0005634;GO:0006355;GO:0008270;GO:0043565 K08524
gene-evm.TU.Chr14.1782 rna-evm.model.Chr14.1782 Chr14 53154266 53160727 PREDICTED: Uncharacterized protein y4mH GO:0016787 K07046
gene-evm.TU.Chr14.1783 rna-evm.model.Chr14.1783 Chr14 53187137 53190931 PREDICTED: Chromodomain-helicase-DNA-binding protein 2 nan K20091
gene-evm.TU.Chr14.1785 rna-evm.model.Chr14.1785 Chr14 53223007 53224106 PREDICTED: Tripartite motif-containing protein 3 nan K10804

For more detailed data, you can explore the Download section to access the full dataset.