CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr14.1661_evm.TU.Chr14.1662 rna-evm.model.Chr14.1661_evm.model.Chr14.1662 Chr14 50981499 51028988 PREDICTED: Endophilin-B1 GO:0005515;GO:0005737 K11248
gene-evm.TU.Chr14.1663 rna-evm.model.Chr14.1663 Chr14 51039522 51050880 PREDICTED: Mitochondrial mRNA pseudouridine synthase Trub2 GO:0001522;GO:0006396;GO:0009982 K23497
gene-evm.TU.Chr14.1664 rna-evm.model.Chr14.1664 Chr14 51055288 51061891 PREDICTED: Uncharacterized protein C1orf131 homolog nan K13150
gene-evm.TU.Chr14.1665 rna-evm.model.Chr14.1665 Chr14 51062362 51070085 PREDICTED: Collagen alpha-1(XII) chain nan K06238
gene-evm.TU.Chr14.1666 rna-evm.model.Chr14.1666 Chr14 51072877 51077501 uncharacterized protein nan K16770
gene-evm.TU.Chr14.1668 rna-evm.model.Chr14.1668 Chr14 51102067 51103619 uncharacterized protein nan K22355
gene-evm.TU.Chr14.1669 rna-evm.model.Chr14.1669 Chr14 51205964 51214502 PREDICTED: Calcium channel flower GO:0016020 K26751
gene-evm.TU.Chr14.1671 rna-evm.model.Chr14.1671 Chr14 51227979 51245806 PREDICTED: Tyramine beta-hydroxylase GO:0004497;GO:0005507;GO:0016715;GO:0055114 K00503
gene-evm.TU.Chr14.1672 rna-evm.model.Chr14.1672 Chr14 51246124 51250676 PREDICTED: Complement C1q tumor necrosis factor-related protein 4 nan K24236
gene-evm.TU.Chr14.1674 rna-evm.model.Chr14.1674 Chr14 51303091 51365460 PREDICTED: Sushi, von Willebrand factor type A, EGF and pentraxin domain-containing protein 1 nan K24469

For more detailed data, you can explore the Download section to access the full dataset.