CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr14.1811 rna-evm.model.Chr14.1811 Chr14 53780820 53783298 uncharacterized protein nan K06517
gene-evm.TU.Chr14.1812 rna-evm.model.Chr14.1812 Chr14 53783339 53805212 PREDICTED: Deleted in malignant brain tumors 1 protein GO:0005044;GO:0016020 K09624
gene-evm.TU.Chr14.1813 rna-evm.model.Chr14.1813 Chr14 53809766 53826415 PREDICTED: Platelet endothelial aggregation receptor 1 nan K13297
gene-evm.TU.Chr14.1815 rna-evm.model.Chr14.1815 Chr14 53829548 53839228 PREDICTED: Receptor-type tyrosine-protein phosphatase T GO:0004725;GO:0005515;GO:0006470;GO:0016311;GO:0016791 K06776
gene-evm.TU.Chr14.1816 rna-evm.model.Chr14.1816 Chr14 53848442 53857929 PREDICTED: Surfeit locus protein 2 nan K15205
gene-evm.TU.Chr14.1817 rna-evm.model.Chr14.1817 Chr14 53859305 53880535 PREDICTED: Protocadherin-15 GO:0005509;GO:0007156;GO:0016020;GO:0098609 K06813
gene-evm.TU.Chr14.1818 rna-evm.model.Chr14.1818 Chr14 53883461 53886545 PREDICTED: E3 ubiquitin-protein ligase TRIM9 GO:0008270;GO:0046872 K12026
gene-evm.TU.Chr14.1819 rna-evm.model.Chr14.1819 Chr14 53890658 53899931 PREDICTED: Cadherin EGF LAG seven-pass G-type receptor 2 GO:0005509;GO:0007156;GO:0016020 K16669
gene-evm.TU.Chr14.1822 rna-evm.model.Chr14.1822 Chr14 53945653 53947728 PREDICTED: Complement C1q tumor necrosis factor-related protein 3 nan K24236
gene-evm.TU.Chr14.1823 rna-evm.model.Chr14.1823 Chr14 53955180 53971502 PREDICTED: Complement C1q tumor necrosis factor-related protein 3 nan K24236

For more detailed data, you can explore the Download section to access the full dataset.