CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr14.1696 rna-evm.model.Chr14.1696 Chr14 51992456 52008298 PREDICTED: Sushi, von Willebrand factor type A, EGF and pentraxin domain-containing protein 1 GO:0005509 K24469
gene-evm.TU.Chr14.1697 rna-evm.model.Chr14.1697.3 Chr14 52014175 52053053 PREDICTED: Coadhesin (Fragment) GO:0005509 K24469
gene-evm.TU.Chr14.1698 rna-evm.model.Chr14.1698 Chr14 52060296 52060517 uncharacterized protein nan nan
gene-evm.TU.Chr14.1699 rna-evm.model.Chr14.1699 Chr14 52067399 52068136 PREDICTED: Sarcoplasmic calcium-binding protein GO:0005509 K23901
gene-evm.TU.Chr14.17 rna-evm.model.Chr14.17 Chr14 396608 405427 PREDICTED: THAP domain-containing protein 11 GO:0003676 K23204
gene-evm.TU.Chr14.170 rna-evm.model.Chr14.170 Chr14 5624300 5639142 PREDICTED: Neutrophil cytosol factor 2 GO:0005515 K08010
gene-evm.TU.Chr14.1700 rna-evm.model.Chr14.1700 Chr14 52072153 52080035 PREDICTED: Sarcoplasmic calcium-binding protein nan K13448
gene-evm.TU.Chr14.1701 rna-evm.model.Chr14.1701 Chr14 52080602 52080994 PREDICTED: sarcoplasmic calsium binding protein nan K09650
gene-evm.TU.Chr14.1702 rna-evm.model.Chr14.1702 Chr14 52084809 52087852 PREDICTED: Sarcoplasmic calcium-binding protein nan K22619
gene-evm.TU.Chr14.1703 rna-evm.model.Chr14.1703 Chr14 52095548 52113319 PREDICTED: Sarcoplasmic calcium-binding protein nan K13448

For more detailed data, you can explore the Download section to access the full dataset.