CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr14.1676 rna-evm.model.Chr14.1676 Chr14 51382561 51389700 PREDICTED: L-proline trans-4-hydroxylase nan K00477
gene-evm.TU.Chr14.1677 rna-evm.model.Chr14.1677 Chr14 51413690 51418314 PREDICTED: Pyrimidine-specific ribonucleoside hydrolase RihA nan K01250
gene-evm.TU.Chr14.1678 rna-evm.model.Chr14.1678 Chr14 51422162 51445431 PREDICTED: cAMP-dependent protein kinase regulatory subunit nan K04739
gene-evm.TU.Chr14.1679 rna-evm.model.Chr14.1679 Chr14 51464889 51480989 PREDICTED: NmrA-like family domain-containing protein 1 nan K19267
gene-evm.TU.Chr14.1680 rna-evm.model.Chr14.1680 Chr14 51484542 51515142 PREDICTED: Whirlin GO:0005515;GO:0007605;GO:0050953 K21879
gene-evm.TU.Chr14.1681 rna-evm.model.Chr14.1681 Chr14 51524125 51536864 PREDICTED: Arylsulfatase B GO:0008484 K12375
gene-evm.TU.Chr14.1682 rna-evm.model.Chr14.1682 Chr14 51540530 51587534 PREDICTED: Fibropellin-1 GO:0005509 K20994
gene-evm.TU.Chr14.1683 rna-evm.model.Chr14.1683 Chr14 51591722 51610379 PREDICTED: PR domain zinc finger protein 12 GO:0016787 K07046
gene-evm.TU.Chr14.1684 rna-evm.model.Chr14.1684 Chr14 51611441 51662583 PREDICTED: Protein SMG7 nan K14409
gene-evm.TU.Chr14.1685 rna-evm.model.Chr14.1685 Chr14 51676956 51678335 uncharacterized protein nan nan

For more detailed data, you can explore the Download section to access the full dataset.