CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr14.1786 rna-evm.model.Chr14.1786 Chr14 53273651 53274742 PREDICTED: Transposable element Tc1 transposase GO:0003677;GO:0006313;GO:0015074 K07494
gene-evm.TU.Chr14.1787 rna-evm.model.Chr14.1787 Chr14 53277116 53277420 uncharacterized protein nan nan
gene-evm.TU.Chr14.1789 rna-evm.model.Chr14.1789 Chr14 53319195 53380019 PREDICTED: Pappalysin-1 nan K07762
gene-evm.TU.Chr14.1790 rna-evm.model.Chr14.1790 Chr14 53384826 53414466 PREDICTED: Far upstream element-binding protein 3 GO:0003676;GO:0003723;GO:0006355 K13210
gene-evm.TU.Chr14.1791 rna-evm.model.Chr14.1791 Chr14 53416153 53423077 uncharacterized protein nan nan
gene-evm.TU.Chr14.1793 rna-evm.model.Chr14.1793 Chr14 53431396 53432805 uncharacterized protein nan K17834
gene-evm.TU.Chr14.1798 rna-evm.model.Chr14.1798 Chr14 53500588 53506295 uncharacterized protein nan K06666
gene-evm.TU.Chr14.1799 rna-evm.model.Chr14.1799 Chr14 53514869 53515324 uncharacterized protein nan nan
gene-evm.TU.Chr14.18 rna-evm.model.Chr14.18 Chr14 405851 407281 PREDICTED: P2X purinoceptor 7 nan K05220
gene-evm.TU.Chr14.180 rna-evm.model.Chr14.180 Chr14 5942771 5951160 PREDICTED: Foot protein 1 variant 1 nan K25740

For more detailed data, you can explore the Download section to access the full dataset.