CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr14.1704 rna-evm.model.Chr14.1704 Chr14 52122210 52127043 uncharacterized protein GO:0005509 K10840
gene-evm.TU.Chr14.1705 rna-evm.model.Chr14.1705 Chr14 52132089 52132487 PREDICTED: Sarcoplasmic calcium-binding protein GO:0005509 K02183
gene-evm.TU.Chr14.1706 rna-evm.model.Chr14.1706 Chr14 52139775 52150036 PREDICTED: Sarcoplasmic calcium-binding protein GO:0005509 K23901
gene-evm.TU.Chr14.1708 rna-evm.model.Chr14.1708 Chr14 52174696 52176184 PREDICTED: sarcoplasmic calcium binding protein nan nan
gene-evm.TU.Chr14.1709 rna-evm.model.Chr14.1709 Chr14 52182622 52184613 PREDICTED: Sarcoplasmic calcium-binding protein GO:0005509 K02183
gene-evm.TU.Chr14.171 rna-evm.model.Chr14.171 Chr14 5642365 5683755 PREDICTED: F-box/LRR-repeat protein 6 GO:0005515 K10272
gene-evm.TU.Chr14.1710 rna-evm.model.Chr14.1710 Chr14 52191557 52205751 PREDICTED: Sarcoplasmic calcium-binding protein GO:0005509 K23901
gene-evm.TU.Chr14.1711 rna-evm.model.Chr14.1711 Chr14 52207821 52211803 PREDICTED: Sarcoplasmic calcium-binding protein GO:0005509 K23901
gene-evm.TU.Chr14.1712 rna-evm.model.Chr14.1712 Chr14 52213996 52276736 PREDICTED: Mucin-like protein (Fragment) GO:0005509;GO:0007160 K23342
gene-evm.TU.Chr14.172 rna-evm.model.Chr14.172 Chr14 5687918 5692549 PREDICTED: agrin GO:0005515 K23615

For more detailed data, you can explore the Download section to access the full dataset.