CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr14.1647 rna-evm.model.Chr14.1647 Chr14 50630888 50640955 PREDICTED: Ankyrin repeat and protein kinase domain-containing protein 1 GO:0005515 K02580
gene-evm.TU.Chr14.1650 rna-evm.model.Chr14.1650 Chr14 50717611 50771467 PREDICTED: Axonemal dynein light chain domain-containing protein 1 nan K20361
gene-evm.TU.Chr14.1651 rna-evm.model.Chr14.1651 Chr14 50780289 50799567 PREDICTED: Folylpolyglutamate synthase, mitochondrial GO:0004326;GO:0005524;GO:0009396 K01930
gene-evm.TU.Chr14.1652 rna-evm.model.Chr14.1652 Chr14 50810662 50812481 PREDICTED: NMDA receptor synaptonuclear signaling and neuronal migration factor nan nan
gene-evm.TU.Chr14.1653 rna-evm.model.Chr14.1653 Chr14 50816815 50821646 PREDICTED: NMDA receptor synaptonuclear signaling and neuronal migration factor GO:0048168;GO:2001222 K23844
gene-evm.TU.Chr14.1656 rna-evm.model.Chr14.1656 Chr14 50882143 50890377 PREDICTED: Ribosome-recycling factor, mitochondrial GO:0006412 K02838
gene-evm.TU.Chr14.1657 rna-evm.model.Chr14.1657 Chr14 50893290 50923868 PREDICTED: Probable RNA-binding protein 18 GO:0003676 K24527
gene-evm.TU.Chr14.1658 rna-evm.model.Chr14.1658 Chr14 50926762 50936899 PREDICTED: Kelch-like protein 20 GO:0005515 K10457
gene-evm.TU.Chr14.1659 rna-evm.model.Chr14.1659.1 Chr14 50937022 50942126 PREDICTED: Ankyrin repeat domain-containing protein 45 GO:0005515 K21878
gene-evm.TU.Chr14.1660 rna-evm.model.Chr14.1660 Chr14 50946983 50976869 PREDICTED: Uncharacterized protein C9orf43 GO:0005515 K10102

For more detailed data, you can explore the Download section to access the full dataset.