CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr14.1626 rna-evm.model.Chr14.1626 Chr14 49995166 49998843 PREDICTED: Beta-1,4-galactosyltransferase galt-1 nan K14434
gene-evm.TU.Chr14.1627 rna-evm.model.Chr14.1627 Chr14 50003347 50010142 PREDICTED: Putative L-cysteine desulfhydrase 1 nan K22207
gene-evm.TU.Chr14.1628 rna-evm.model.Chr14.1628 Chr14 50011788 50023209 PREDICTED: Dystrophin-like protein 1 nan K16513
gene-evm.TU.Chr14.1629 rna-evm.model.Chr14.1629 Chr14 50060334 50133459 PREDICTED: Carboxyl-terminal PDZ ligand of neuronal nitric oxide synthase protein GO:0005515 K16513
gene-evm.TU.Chr14.163 rna-evm.model.Chr14.163 Chr14 5347371 5348621 PREDICTED: Stress response protein nst1 nan K10750
gene-evm.TU.Chr14.1630 rna-evm.model.Chr14.1630 Chr14 50163831 50169656 uncharacterized protein nan K22804
gene-evm.TU.Chr14.1631 rna-evm.model.Chr14.1631 Chr14 50302453 50343764 PREDICTED: Breast cancer type 1 susceptibility protein homolog GO:0005515 K10605
gene-evm.TU.Chr14.1632 rna-evm.model.Chr14.1632 Chr14 50346421 50357104 PREDICTED: N-acetylneuraminate lyase GO:0016829 K01639
gene-evm.TU.Chr14.1633 rna-evm.model.Chr14.1633 Chr14 50357789 50362524 uncharacterized protein GO:0005509 K13448
gene-evm.TU.Chr14.1635 rna-evm.model.Chr14.1635 Chr14 50370678 50374811 PREDICTED: Crystallin J1A nan nan

For more detailed data, you can explore the Download section to access the full dataset.