CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.2018 rna-evm.model.Chr1.2018 Chr1 63828828 63859952 PREDICTED: myosin heavy chain GO:0005741;GO:0035694 K22257
gene-evm.TU.Chr1.2019 rna-evm.model.Chr1.2019 Chr1 63864727 63868258 PREDICTED: Rho-associated protein kinase 2 [EC:2.7.11.1] nan K25247
gene-evm.TU.Chr1.202 rna-evm.model.Chr1.202 Chr1 6200671 6301156 PREDICTED: ATP-dependent (S)-NAD(P)H-hydrate dehydratase GO:0052855 K17757
gene-evm.TU.Chr1.2020 rna-evm.model.Chr1.2020 Chr1 63870187 63882759 PREDICTED: myosin heavy chain GO:0005741;GO:0035694 nan
gene-evm.TU.Chr1.2021 rna-evm.model.Chr1.2021 Chr1 63884418 63888277 PREDICTED: myosin heavy chain nan K17910
gene-evm.TU.Chr1.2022 rna-evm.model.Chr1.2022.1 Chr1 63889540 63905886 PREDICTED: myosin heavy chain nan K10421
gene-evm.TU.Chr1.2023 rna-evm.model.Chr1.2023 Chr1 63907528 63911929 PREDICTED: Ubiquitin-conjugating enzyme E2-22 kDa nan K04649
gene-evm.TU.Chr1.2024 rna-evm.model.Chr1.2024 Chr1 63918997 63922871 PREDICTED: E3 ubiquitin-protein ligase TRIM56 GO:0008270;GO:0046872 K12026
gene-evm.TU.Chr1.2025 rna-evm.model.Chr1.2025 Chr1 63926497 63931249 PREDICTED: 40S ribosomal protein S3a GO:0003735;GO:0005840;GO:0006412 K02984
gene-evm.TU.Chr1.2026 rna-evm.model.Chr1.2026 Chr1 63931414 63948193 PREDICTED: Male-specific lethal 3 homolog GO:0003677;GO:0005634;GO:0006325;GO:0006355;GO:0072487 K18403

For more detailed data, you can explore the Download section to access the full dataset.