CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr14.1616 rna-evm.model.Chr14.1616 Chr14 49866289 49900384 PREDICTED: Glycerophosphocholine phosphodiesterase GPCPD1 GO:0006629;GO:0008081;GO:0046475;GO:0047389;GO:2001070 K18695
gene-evm.TU.Chr14.1617 rna-evm.model.Chr14.1617 Chr14 49915203 49916083 PREDICTED: organic solute transporter subunit alpha GO:0003676;GO:0008270 K09250
gene-evm.TU.Chr14.1618 rna-evm.model.Chr14.1618 Chr14 49917037 49918035 PREDICTED: gamma-tubulin complex component 6 nan nan
gene-evm.TU.Chr14.1619 rna-evm.model.Chr14.1619 Chr14 49918075 49919403 PREDICTED: Integrase/recombinase xerD homolog nan K04763
gene-evm.TU.Chr14.162 rna-evm.model.Chr14.162 Chr14 5346480 5347251 PREDICTED: Tigger transposable element-derived protein 6 GO:0003676 nan
gene-evm.TU.Chr14.1620 rna-evm.model.Chr14.1620 Chr14 49926957 49930546 PREDICTED: neuronal calcium sensor 1 GO:0005509 K13448
gene-evm.TU.Chr14.1621 rna-evm.model.Chr14.1621 Chr14 49941625 49942158 PREDICTED: BTB/POZ domain-containing protein KCTD1/15 GO:0003677;GO:0006310;GO:0015074 K04763
gene-evm.TU.Chr14.1622 rna-evm.model.Chr14.1622 Chr14 49942204 49942584 PREDICTED: zinc finger MYM-type protein 2-like nan K24675
gene-evm.TU.Chr14.1623 rna-evm.model.Chr14.1623 Chr14 49951153 49967518 PREDICTED: Eukaryotic translation initiation factor 3 subunit G GO:0003676 K03248
gene-evm.TU.Chr14.1624 rna-evm.model.Chr14.1624 Chr14 49977020 49979403 uncharacterized protein nan K24425

For more detailed data, you can explore the Download section to access the full dataset.