CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr14.1607 rna-evm.model.Chr14.1607 Chr14 49585768 49587109 PREDICTED: Leucine zipper protein 4 nan K14590
gene-evm.TU.Chr14.1608 rna-evm.model.Chr14.1608 Chr14 49682315 49682811 PREDICTED: TPA_exp: putative tyrosine recombinase nan nan
gene-evm.TU.Chr14.1609 rna-evm.model.Chr14.1609 Chr14 49684608 49684938 uncharacterized protein nan nan
gene-evm.TU.Chr14.161 rna-evm.model.Chr14.161 Chr14 5345146 5345802 uncharacterized protein GO:0003677 K20015
gene-evm.TU.Chr14.1610 rna-evm.model.Chr14.1610 Chr14 49712252 49712632 PREDICTED: histone-lysine N-methyltransferase SETMAR [EC:2.1.1.43] nan K24348
gene-evm.TU.Chr14.1611 rna-evm.model.Chr14.1611 Chr14 49714879 49739255 PREDICTED: Signal peptide, CUB and EGF-like domain-containing protein 1 nan K24468
gene-evm.TU.Chr14.1612 rna-evm.model.Chr14.1612 Chr14 49743366 49743939 uncharacterized protein nan nan
gene-evm.TU.Chr14.1613 rna-evm.model.Chr14.1613 Chr14 49755851 49781094 PREDICTED: retinol-binding protein 4 GO:0005501;GO:0034632 K18271
gene-evm.TU.Chr14.1614 rna-evm.model.Chr14.1614 Chr14 49785310 49795619 PREDICTED: Carbohydrate sulfotransferase 14 GO:0008146;GO:0016020;GO:0016051 K07779
gene-evm.TU.Chr14.1615 rna-evm.model.Chr14.1615 Chr14 49803444 49820144 PREDICTED: adhesion G-protein coupled receptor F5 nan nan

For more detailed data, you can explore the Download section to access the full dataset.