CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr14.1597 rna-evm.model.Chr14.1597 Chr14 49209414 49233632 PREDICTED: Eukaryotic translation initiation factor 3 subunit G GO:0003676 K03248
gene-evm.TU.Chr14.1598 rna-evm.model.Chr14.1598 Chr14 49263601 49266589 PREDICTED: neuronal calcium sensor 1 GO:0005509 K13448
gene-evm.TU.Chr14.1599 rna-evm.model.Chr14.1599 Chr14 49281684 49310097 PREDICTED: Glycerophosphocholine phosphodiesterase GPCPD1 GO:0006629;GO:0008081;GO:0046475;GO:0047389;GO:2001070 K18695
gene-evm.TU.Chr14.16 rna-evm.model.Chr14.16 Chr14 394213 395843 PREDICTED: KRAB domain-containing zinc finger protein nan K03905
gene-evm.TU.Chr14.160 rna-evm.model.Chr14.160 Chr14 5302741 5307532 PREDICTED: Probable serine/threonine-protein kinase pats1 GO:0005515;GO:0007165 K08844
gene-evm.TU.Chr14.1600 rna-evm.model.Chr14.1600 Chr14 49355599 49473261 PREDICTED: Carboxyl-terminal PDZ ligand of neuronal nitric oxide synthase protein GO:0005515 K16513
gene-evm.TU.Chr14.1601 rna-evm.model.Chr14.1601 Chr14 49494030 49495792 uncharacterized protein nan nan
gene-evm.TU.Chr14.1604 rna-evm.model.Chr14.1604 Chr14 49550038 49550940 PREDICTED: Beta-1,4-galactosyltransferase galt-1 nan K14434
gene-evm.TU.Chr14.1605 rna-evm.model.Chr14.1605 Chr14 49567830 49581181 PREDICTED: Putative L-cysteine desulfhydrase 1 nan K22207
gene-evm.TU.Chr14.1606 rna-evm.model.Chr14.1606 Chr14 49581749 49582029 uncharacterized protein nan K22207

For more detailed data, you can explore the Download section to access the full dataset.