CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr14.1582 rna-evm.model.Chr14.1582 Chr14 48604631 48605549 PREDICTED: Actin, clone 403 nan K05692
gene-evm.TU.Chr14.1583 rna-evm.model.Chr14.1583 Chr14 48614813 48622210 PREDICTED: ankyrin repeat domain-containing protein 17 nan K16179
gene-evm.TU.Chr14.1586 rna-evm.model.Chr14.1586 Chr14 48651227 48715022 PREDICTED: 60 kDa SS-A/Ro ribonucleoprotein GO:0003723 K11089
gene-evm.TU.Chr14.1589 rna-evm.model.Chr14.1589 Chr14 48793747 48852590 PREDICTED: E3 ubiquitin-protein ligase DZIP3 nan K10642
gene-evm.TU.Chr14.1590 rna-evm.model.Chr14.1590 Chr14 48891259 48892029 uncharacterized protein nan nan
gene-evm.TU.Chr14.1591 rna-evm.model.Chr14.1591 Chr14 48931971 48936790 PREDICTED: solute carrier family 15, member 5 nan nan
gene-evm.TU.Chr14.1593 rna-evm.model.Chr14.1593 Chr14 49063003 49063577 PREDICTED: Transposable element Tcb2 transposase nan nan
gene-evm.TU.Chr14.1594 rna-evm.model.Chr14.1594 Chr14 49058218 49094864 PREDICTED: E3 ubiquitin-protein ligase DZIP3 nan K10642
gene-evm.TU.Chr14.1595 rna-evm.model.Chr14.1595 Chr14 49121538 49149481 PREDICTED: NLR family CARD domain-containing protein 3 nan K10642
gene-evm.TU.Chr14.1596 rna-evm.model.Chr14.1596 Chr14 49199499 49208087 PREDICTED: Atypical kinase COQ8B, mitochondrial nan K08869

For more detailed data, you can explore the Download section to access the full dataset.