CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr14.1572 rna-evm.model.Chr14.1572 Chr14 48325120 48362101 PREDICTED: DNA (cytosine-5)-methyltransferase 1 GO:0003677;GO:0003682;GO:0008168;GO:0008270 K00558
gene-evm.TU.Chr14.1573 rna-evm.model.Chr14.1573 Chr14 48372634 48387032 PREDICTED: retinol-binding protein 4 GO:0005501;GO:0034632 K03098
gene-evm.TU.Chr14.1574 rna-evm.model.Chr14.1574 Chr14 48388503 48391559 PREDICTED: glutamic acid-rich protein-like, partial nan K11658
gene-evm.TU.Chr14.1575 rna-evm.model.Chr14.1575 Chr14 48398842 48415005 PREDICTED: Carbohydrate sulfotransferase 14 GO:0008146;GO:0016020;GO:0016051 K07779
gene-evm.TU.Chr14.1576 rna-evm.model.Chr14.1576 Chr14 48426079 48437048 PREDICTED: G protein-coupled receptor 179 nan nan
gene-evm.TU.Chr14.1577 rna-evm.model.Chr14.1577 Chr14 48480535 48481841 PREDICTED: Exodeoxyribonuclease III nan K01142
gene-evm.TU.Chr14.1579 rna-evm.model.Chr14.1579 Chr14 48498077 48518792 PREDICTED: Zinc metalloproteinase nas-31 GO:0004222;GO:0006508;GO:0008237;GO:0008270 K08076
gene-evm.TU.Chr14.158 rna-evm.model.Chr14.158 Chr14 5192360 5239868 PREDICTED: Neutrophil cytosol factor 2 nan K08010
gene-evm.TU.Chr14.1580 rna-evm.model.Chr14.1580 Chr14 48538007 48547967 PREDICTED: Complement control protein C3 nan K04004
gene-evm.TU.Chr14.1581 rna-evm.model.Chr14.1581 Chr14 48582326 48584368 PREDICTED: mucin-2-like, partial nan K06474

For more detailed data, you can explore the Download section to access the full dataset.