CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr14.1557 rna-evm.model.Chr14.1557 Chr14 47950797 47958876 PREDICTED: Nose resistant to fluoxetine protein 6 GO:0016747 K16568
gene-evm.TU.Chr14.1560 rna-evm.model.Chr14.1560 Chr14 47991424 47995018 PREDICTED: Uncharacterized protein CXorf38 nan K19533
gene-evm.TU.Chr14.1561 rna-evm.model.Chr14.1561 Chr14 48004234 48005258 PREDICTED: nose resistant to fluoxetine protein 6 nan K04641
gene-evm.TU.Chr14.1562 rna-evm.model.Chr14.1562 Chr14 48022543 48036946 PREDICTED: Nose resistant to fluoxetine protein 6 GO:0016747 K16568
gene-evm.TU.Chr14.1566 rna-evm.model.Chr14.1566 Chr14 48119356 48120216 PREDICTED: ankyrin repeat domain-containing protein 17 nan K16179
gene-evm.TU.Chr14.1567 rna-evm.model.Chr14.1567 Chr14 48131890 48136455 PREDICTED: Actin, adductor muscle nan K05692
gene-evm.TU.Chr14.1568 rna-evm.model.Chr14.1568 Chr14 48164886 48168831 PREDICTED: mucin-2-like, partial nan K06546
gene-evm.TU.Chr14.1569 rna-evm.model.Chr14.1569 Chr14 48208174 48219346 PREDICTED: CUB and sushi domain-containing protein nan K23817
gene-evm.TU.Chr14.1570 rna-evm.model.Chr14.1570 Chr14 48224137 48250503 PREDICTED: Zinc metalloproteinase nas-31 GO:0004222;GO:0006508;GO:0008237;GO:0008270 K08076
gene-evm.TU.Chr14.1571 rna-evm.model.Chr14.1571 Chr14 48278139 48319527 PREDICTED: Kynurenine--oxoglutarate transaminase 3 GO:0006520;GO:0009058;GO:0030170;GO:0036137;GO:0070189 K00816

For more detailed data, you can explore the Download section to access the full dataset.