CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr14.1541 rna-evm.model.Chr14.1541 Chr14 47481832 47488132 PREDICTED: Phospholipid scramblase 2 GO:0017121;GO:0017128 K11086
gene-evm.TU.Chr14.1542 rna-evm.model.Chr14.1542 Chr14 47495444 47497570 PREDICTED: three-Cys-motif partner protein TcmP nan K04890
gene-evm.TU.Chr14.1543 rna-evm.model.Chr14.1543 Chr14 47523616 47537629 uncharacterized protein nan K24719
gene-evm.TU.Chr14.155 rna-evm.model.Chr14.155 Chr14 5060317 5063016 PREDICTED: RNA-directed DNA polymerase from mobile element jockey nan K26653
gene-evm.TU.Chr14.1551 rna-evm.model.Chr14.1551 Chr14 47826554 47836457 PREDICTED: Fatty acid-binding protein type 3 GO:0008289 K08756
gene-evm.TU.Chr14.1552 rna-evm.model.Chr14.1552 Chr14 47876448 47887512 PREDICTED: Nose resistant to fluoxetine protein 6 GO:0016747 K16568
gene-evm.TU.Chr14.1553_evm.TU.Chr14.1559 rna-evm.model.Chr14.1553_evm.model.Chr14.1559 Chr14 47903917 47986609 PREDICTED: viral A-type inclusion protein nan K13985
gene-evm.TU.Chr14.1554 rna-evm.model.Chr14.1554 Chr14 47925494 47930762 PREDICTED: Uncharacterized calcium-binding protein C800.10c nan K19533
gene-evm.TU.Chr14.1555 rna-evm.model.Chr14.1555 Chr14 47935579 47939578 uncharacterized protein nan nan
gene-evm.TU.Chr14.1556 rna-evm.model.Chr14.1556 Chr14 47946763 47949738 PREDICTED: Nose resistant to fluoxetine protein 6 nan nan

For more detailed data, you can explore the Download section to access the full dataset.