CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr14.1530 rna-evm.model.Chr14.1530 Chr14 47086786 47095333 PREDICTED: Protein lev-9 nan K24469
gene-evm.TU.Chr14.1532 rna-evm.model.Chr14.1532 Chr14 47223766 47277903 PREDICTED: Protein lev-9 nan K24469
gene-evm.TU.Chr14.1533 rna-evm.model.Chr14.1533 Chr14 47284701 47295780 PREDICTED: Syntaxin-6 GO:0016020;GO:0048193 K08498
gene-evm.TU.Chr14.1534 rna-evm.model.Chr14.1534 Chr14 47305501 47314642 PREDICTED: Selenocysteine-specific elongation factor GO:0003924;GO:0005525 K03833
gene-evm.TU.Chr14.1535 rna-evm.model.Chr14.1535 Chr14 47316608 47327562 PREDICTED: 26S proteasome non-ATPase regulatory subunit 5 GO:0043248 K06692
gene-evm.TU.Chr14.1536 rna-evm.model.Chr14.1536 Chr14 47334715 47347634 PREDICTED: Spliceosome RNA helicase DDX39B GO:0003676;GO:0005524 K12812
gene-evm.TU.Chr14.1537 rna-evm.model.Chr14.1537 Chr14 47359414 47370389 PREDICTED: UPF0184 protein C9orf16 nan K07184
gene-evm.TU.Chr14.1538 rna-evm.model.Chr14.1538 Chr14 47390125 47408916 PREDICTED: Suppressor APC domain-containing protein 2 nan K09892
gene-evm.TU.Chr14.1539 rna-evm.model.Chr14.1539 Chr14 47416601 47457501 PREDICTED: Cip1-interacting zinc finger protein GO:0003676;GO:0005634;GO:0008270 K13213
gene-evm.TU.Chr14.1540 rna-evm.model.Chr14.1540 Chr14 47474374 47477032 PREDICTED: three-Cys-motif partner protein TcmP nan K23718

For more detailed data, you can explore the Download section to access the full dataset.