CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr14.1519 rna-evm.model.Chr14.1519 Chr14 46792919 46796132 PREDICTED: Cytosolic phospholipase A2 nan K16342
gene-evm.TU.Chr14.1520 rna-evm.model.Chr14.1520 Chr14 46799286 46800017 PREDICTED: D-erythrulose reductase nan K03331
gene-evm.TU.Chr14.1522 rna-evm.model.Chr14.1522 Chr14 46807755 46821951 PREDICTED: Alpha-tubulin N-acetyltransferase 1 GO:0005874;GO:0019799;GO:0071929 K19573
gene-evm.TU.Chr14.1523 rna-evm.model.Chr14.1523 Chr14 46857597 46883132 PREDICTED: Y+L amino acid transporter 2 GO:0016020;GO:0022857;GO:0055085 K13781
gene-evm.TU.Chr14.1524 rna-evm.model.Chr14.1524 Chr14 46892252 46944751 PREDICTED: Protein PRRC2C nan K17586
gene-evm.TU.Chr14.1525 rna-evm.model.Chr14.1525 Chr14 46948254 46949609 PREDICTED: E1A/CREB-binding protein [EC:2.3.1.48] nan K18723
gene-evm.TU.Chr14.1526 rna-evm.model.Chr14.1526 Chr14 46946205 46956531 PREDICTED: Protein C10 nan nan
gene-evm.TU.Chr14.1527 rna-evm.model.Chr14.1527 Chr14 46962967 47000558 PREDICTED: Serine/threonine-protein kinase N2 GO:0004672;GO:0004674;GO:0005524;GO:0006468;GO:0007165 K23691
gene-evm.TU.Chr14.1528 rna-evm.model.Chr14.1528 Chr14 47009231 47027202 PREDICTED: Abasic site processing protein HMCES nan K05696
gene-evm.TU.Chr14.153 rna-evm.model.Chr14.153 Chr14 5054083 5055791 PREDICTED: Fucolectin-3 nan K06260

For more detailed data, you can explore the Download section to access the full dataset.