CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.2007 rna-evm.model.Chr1.2007 Chr1 63725844 63729005 PREDICTED: Rho-associated protein kinase 2 [EC:2.7.11.1] nan K25802
gene-evm.TU.Chr1.2008 rna-evm.model.Chr1.2008 Chr1 63730215 63734975 PREDICTED: Rho-associated protein kinase 2 [EC:2.7.11.1] nan nan
gene-evm.TU.Chr1.2009 rna-evm.model.Chr1.2009 Chr1 63740242 63742991 PREDICTED: Galaxin nan K19636
gene-evm.TU.Chr1.201 rna-evm.model.Chr1.201 Chr1 6159582 6170496 PREDICTED: Protocadherin-11 X-linked GO:0005509;GO:0007156;GO:0016020 K16498
gene-evm.TU.Chr1.2010 rna-evm.model.Chr1.2010 Chr1 63748481 63753127 PREDICTED: Rho-associated protein kinase 2 [EC:2.7.11.1] nan nan
gene-evm.TU.Chr1.2011 rna-evm.model.Chr1.2011 Chr1 63756873 63759630 PREDICTED: myosin heavy chain GO:0005741;GO:0035694 K04935
gene-evm.TU.Chr1.2012 rna-evm.model.Chr1.2012 Chr1 63760891 63767619 PREDICTED: myosin heavy chain GO:0005741;GO:0035694 K22257
gene-evm.TU.Chr1.2013 rna-evm.model.Chr1.2013 Chr1 63768521 63771634 PREDICTED: Rho-associated protein kinase 2 [EC:2.7.11.1] nan K21894
gene-evm.TU.Chr1.2014 rna-evm.model.Chr1.2014 Chr1 63776979 63778163 PREDICTED: Rho-associated protein kinase 2 [EC:2.7.11.1] nan K26001
gene-evm.TU.Chr1.2015 rna-evm.model.Chr1.2015 Chr1 63787508 63802830 PREDICTED: Rho-associated protein kinase 2 [EC:2.7.11.1] GO:0005741;GO:0035694 K22257

For more detailed data, you can explore the Download section to access the full dataset.