CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr14.1497 rna-evm.model.Chr14.1497 Chr14 46234525 46239177 PREDICTED: NADPH oxidase activator 1 GO:0005515;GO:0006801;GO:0043020 K08010
gene-evm.TU.Chr14.1498 rna-evm.model.Chr14.1498 Chr14 46242927 46246465 PREDICTED: Sulfotransferase 6B1 GO:0008146 K22523
gene-evm.TU.Chr14.1499_evm.TU.Chr14.1500 rna-evm.model.Chr14.1499_evm.model.Chr14.1500 Chr14 46251998 46303354 PREDICTED: Sulfotransferase 1C2 GO:0008146 K01025
gene-evm.TU.Chr14.15 rna-evm.model.Chr14.15 Chr14 392412 394163 PREDICTED: sentrin-specific protease 1 [EC:3.4.22.68] nan nan
gene-evm.TU.Chr14.150 rna-evm.model.Chr14.150 Chr14 4986410 4987136 PREDICTED: Transposable element Tcb1 transposase GO:0003677;GO:0006313;GO:0015074 nan
gene-evm.TU.Chr14.1501 rna-evm.model.Chr14.1501 Chr14 46408704 46424633 PREDICTED: Sulfotransferase 1C2A GO:0008146 K22523
gene-evm.TU.Chr14.1502 rna-evm.model.Chr14.1502 Chr14 46428495 46433326 PREDICTED: LINE-1 retrotransposable element ORF2 protein nan K26653
gene-evm.TU.Chr14.1503 rna-evm.model.Chr14.1503 Chr14 46477651 46488342 PREDICTED: Bile salt sulfotransferase GO:0008146 K22523
gene-evm.TU.Chr14.1504 rna-evm.model.Chr14.1504 Chr14 46491372 46497575 PREDICTED: Bile salt sulfotransferase GO:0008146 K22523
gene-evm.TU.Chr14.1505 rna-evm.model.Chr14.1505 Chr14 46500607 46501138 PREDICTED: Mariner Mos1 transposase nan K07494

For more detailed data, you can explore the Download section to access the full dataset.