CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr14.1484 rna-evm.model.Chr14.1484 Chr14 45828121 45841351 PREDICTED: Solute carrier family 22 member 5 GO:0016020;GO:0055085 K08202
gene-evm.TU.Chr14.1486 rna-evm.model.Chr14.1486 Chr14 45857686 45895195 PREDICTED: Tetratricopeptide repeat protein 19, mitochondrial GO:0005515;GO:0034551 K18169
gene-evm.TU.Chr14.1487 rna-evm.model.Chr14.1487 Chr14 45904251 45957367 PREDICTED: Regulator of G-protein signaling 3 nan K16449
gene-evm.TU.Chr14.1488 rna-evm.model.Chr14.1488 Chr14 45951538 45952448 PREDICTED: Histone-lysine N-methyltransferase SETMAR nan K11433
gene-evm.TU.Chr14.1489 rna-evm.model.Chr14.1489 Chr14 45963304 46022834 PREDICTED: Down syndrome cell adhesion molecule homolog GO:0005515 K06767
gene-evm.TU.Chr14.149 rna-evm.model.Chr14.149 Chr14 4905899 4925027 PREDICTED: Aromatic-L-amino-acid decarboxylase GO:0006520;GO:0016831;GO:0019752;GO:0030170 K01593
gene-evm.TU.Chr14.1490 rna-evm.model.Chr14.1490 Chr14 46027924 46034293 PREDICTED: Sushi, nidogen and EGF-like domain-containing protein 1 GO:0005509 K24469
gene-evm.TU.Chr14.1491 rna-evm.model.Chr14.1491 Chr14 46036419 46048966 PREDICTED: Sushi repeat-containing protein SRPX2 nan K24469
gene-evm.TU.Chr14.1492 rna-evm.model.Chr14.1492 Chr14 46049332 46071574 PREDICTED: Versican core protein (Fragments) GO:0005509 K06794
gene-evm.TU.Chr14.1493 rna-evm.model.Chr14.1493 Chr14 46073164 46081180 PREDICTED: calmodulin GO:0005509 K13448

For more detailed data, you can explore the Download section to access the full dataset.