CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr14.147 rna-evm.model.Chr14.147 Chr14 4880436 4880940 uncharacterized protein nan nan
gene-evm.TU.Chr14.1470 rna-evm.model.Chr14.1470 Chr14 45126465 45134831 PREDICTED: RING finger protein 44 nan K19041
gene-evm.TU.Chr14.1471 rna-evm.model.Chr14.1471 Chr14 45155647 45185168 PREDICTED: IgGFc-binding protein nan K20001
gene-evm.TU.Chr14.1472 rna-evm.model.Chr14.1472 Chr14 45199462 45217036 PREDICTED: Peroxiredoxin-6 GO:0016209;GO:0016491;GO:0045454;GO:0051920;GO:0055114 K11188
gene-evm.TU.Chr14.1473 rna-evm.model.Chr14.1473 Chr14 45218247 45219839 PREDICTED: RNA-directed DNA polymerase from mobile element jockey nan K26653
gene-evm.TU.Chr14.1476 rna-evm.model.Chr14.1476 Chr14 45302930 45303235 PREDICTED: Caspase-8 GO:0004197;GO:0006508;GO:0008234 K04398
gene-evm.TU.Chr14.1479 rna-evm.model.Chr14.1479 Chr14 45560734 45735800 PREDICTED: Disabled homolog 2-interacting protein GO:0043087 K19901
gene-evm.TU.Chr14.148 rna-evm.model.Chr14.148 Chr14 4890201 4892657 PREDICTED: Zonadhesin nan K14590
gene-evm.TU.Chr14.1480 rna-evm.model.Chr14.1480 Chr14 45761502 45766406 PREDICTED: IgGFc-binding protein nan K19894
gene-evm.TU.Chr14.1481 rna-evm.model.Chr14.1481 Chr14 45796788 45806924 PREDICTED: Solute carrier family 22 member 6-A GO:0016020;GO:0055085 K08202

For more detailed data, you can explore the Download section to access the full dataset.