CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr14.1424 rna-evm.model.Chr14.1424 Chr14 43921655 43921963 PREDICTED: protein kinase D [EC:2.7.11.13] nan nan
gene-evm.TU.Chr14.1427 rna-evm.model.Chr14.1427 Chr14 43980182 43986076 PREDICTED: LINE-1 retrotransposable element ORF2 protein nan K01142
gene-evm.TU.Chr14.1429 rna-evm.model.Chr14.1429 Chr14 44064035 44064370 PREDICTED: dimethyladenosine transferase 2, mitochondrial [EC:2.1.1.-] nan nan
gene-evm.TU.Chr14.1430 rna-evm.model.Chr14.1430 Chr14 44071069 44071473 PREDICTED: CD109 antigen nan K25992
gene-evm.TU.Chr14.1432 rna-evm.model.Chr14.1432 Chr14 44247450 44251112 PREDICTED: Hepatic lectin nan K06468
gene-evm.TU.Chr14.1434 rna-evm.model.Chr14.1434 Chr14 44269743 44286262 PREDICTED: Carbohydrate sulfotransferase 15 GO:0008146 K08106
gene-evm.TU.Chr14.1436 rna-evm.model.Chr14.1436 Chr14 44314967 44332859 uncharacterized protein nan K01332
gene-evm.TU.Chr14.1437 rna-evm.model.Chr14.1437 Chr14 44333381 44363028 PREDICTED: L-proline trans-4-hydroxylase nan K00477
gene-evm.TU.Chr14.1438 rna-evm.model.Chr14.1438 Chr14 44365332 44390135 PREDICTED: Kynurenine--oxoglutarate transaminase 3 GO:0006520;GO:0009058;GO:0030170;GO:0036137;GO:0070189 K00816
gene-evm.TU.Chr14.1439 rna-evm.model.Chr14.1439 Chr14 44396177 44430418 PREDICTED: DNA (cytosine-5)-methyltransferase 1 GO:0003677;GO:0003682;GO:0008168;GO:0008270 K00558

For more detailed data, you can explore the Download section to access the full dataset.