CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr14.1398 rna-evm.model.Chr14.1398 Chr14 43396241 43432121 PREDICTED: IgGFc-binding protein nan K06846
gene-evm.TU.Chr14.1399 rna-evm.model.Chr14.1399 Chr14 43437165 43458524 PREDICTED: Exosome complex component RRP4 GO:0000178;GO:0003723 K03679
gene-evm.TU.Chr14.14 rna-evm.model.Chr14.14 Chr14 278949 279149 uncharacterized protein nan nan
gene-evm.TU.Chr14.140 rna-evm.model.Chr14.140 Chr14 4752083 4764314 PREDICTED: Lipoxygenase homology domain-containing protein 1 GO:0005515 K24822
gene-evm.TU.Chr14.1400 rna-evm.model.Chr14.1400 Chr14 43479233 43499552 PREDICTED: Guanylate cyclase 32E GO:0004383;GO:0006182;GO:0009190;GO:0016849;GO:0035556 K12324
gene-evm.TU.Chr14.1401 rna-evm.model.Chr14.1401 Chr14 43518655 43519836 PREDICTED: Kappa-type opioid receptor GO:0004930;GO:0007186;GO:0016020 K04214
gene-evm.TU.Chr14.1402 rna-evm.model.Chr14.1402 Chr14 43522813 43528513 PREDICTED: 17-beta-hydroxysteroid dehydrogenase 14 nan K09841
gene-evm.TU.Chr14.1403 rna-evm.model.Chr14.1403 Chr14 43544466 43559877 PREDICTED: 17-beta-hydroxysteroid dehydrogenase 14 nan K00059
gene-evm.TU.Chr14.1404 rna-evm.model.Chr14.1404 Chr14 43567184 43578524 PREDICTED: 17-beta-hydroxysteroid dehydrogenase 14 nan K03654
gene-evm.TU.Chr14.1405 rna-evm.model.Chr14.1405 Chr14 43578767 43579619 PREDICTED: ATP-dependent DNA helicase Q-like 3 GO:0003676;GO:0005524 K03654

For more detailed data, you can explore the Download section to access the full dataset.