CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.1995 rna-evm.model.Chr1.1995 Chr1 63549614 63555369 PREDICTED: E3 ubiquitin-protein ligase RNF14 GO:0004842;GO:0005515;GO:0016567 K11971
gene-evm.TU.Chr1.1996 rna-evm.model.Chr1.1996 Chr1 63562593 63567545 PREDICTED: Mitochondrial import inner membrane translocase subunit Tim8 B GO:0005758;GO:0072321 K17780
gene-evm.TU.Chr1.1997 rna-evm.model.Chr1.1997 Chr1 63567687 63570129 uncharacterized protein GO:0003677 K26274
gene-evm.TU.Chr1.1998 rna-evm.model.Chr1.1998 Chr1 63573653 63587064 uncharacterized protein nan K10135
gene-evm.TU.Chr1.1999 rna-evm.model.Chr1.1999 Chr1 63592106 63646316 PREDICTED: Copper-transporting ATPase 1 GO:0030001;GO:0046872 K17686
gene-evm.TU.Chr1.200 rna-evm.model.Chr1.200 Chr1 6146339 6153311 PREDICTED: Protocadherin-1 GO:0005509;GO:0007156;GO:0016020 K16498
gene-evm.TU.Chr1.2000 rna-evm.model.Chr1.2000 Chr1 63646525 63653338 PREDICTED: GDP-Man:Man(3)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase nan K03844
gene-evm.TU.Chr1.2001 rna-evm.model.Chr1.2001 Chr1 63658279 63666937 uncharacterized protein nan K16461
gene-evm.TU.Chr1.2002 rna-evm.model.Chr1.2002 Chr1 63678469 63706120 PREDICTED: CREB-binding protein GO:0000123;GO:0003712;GO:0003713;GO:0004402;GO:0005515;GO:0005634;GO:0006355;GO:0008270;GO:0016573 K04498
gene-evm.TU.Chr1.2005 rna-evm.model.Chr1.2005 Chr1 63717559 63720831 PREDICTED: myosin heavy chain nan nan

For more detailed data, you can explore the Download section to access the full dataset.