CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr14.1304 rna-evm.model.Chr14.1304 Chr14 40637468 40654770 PREDICTED: Hemicentin-1 nan K08631
gene-evm.TU.Chr14.1307 rna-evm.model.Chr14.1307 Chr14 40666415 40685708 PREDICTED: Hemicentin-1 nan K08631
gene-evm.TU.Chr14.1308 rna-evm.model.Chr14.1308 Chr14 40688738 40700198 PREDICTED: Zeta-crystallin GO:0016491;GO:0055114 K00344
gene-evm.TU.Chr14.1309 rna-evm.model.Chr14.1309 Chr14 40710488 40730313 PREDICTED: Phosphatidylserine lipase ABHD16A nan K25824
gene-evm.TU.Chr14.131 rna-evm.model.Chr14.131 Chr14 4395024 4519848 PREDICTED: Sushi, von Willebrand factor type A, EGF and pentraxin domain-containing protein 1 nan K06496
gene-evm.TU.Chr14.1310 rna-evm.model.Chr14.1310 Chr14 40737939 40752293 PREDICTED: DBH-like monooxygenase protein 1 homolog GO:0004497;GO:0005507;GO:0016715;GO:0055114 K00503
gene-evm.TU.Chr14.1312 rna-evm.model.Chr14.1312 Chr14 41044554 41047935 uncharacterized protein nan nan
gene-evm.TU.Chr14.1313 rna-evm.model.Chr14.1313 Chr14 41054879 41059255 uncharacterized protein nan nan
gene-evm.TU.Chr14.1314 rna-evm.model.Chr14.1314 Chr14 41075504 41092685 PREDICTED: exocyst complex component 1 nan nan
gene-evm.TU.Chr14.1315 rna-evm.model.Chr14.1315 Chr14 41141916 41164302 PREDICTED: Acetylcholine receptor subunit delta GO:0004888;GO:0005216;GO:0005230;GO:0006811;GO:0016020;GO:0034220 K04808

For more detailed data, you can explore the Download section to access the full dataset.