CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr14.1317 rna-evm.model.Chr14.1317 Chr14 41182161 41182619 uncharacterized protein nan nan
gene-evm.TU.Chr14.1319 rna-evm.model.Chr14.1319 Chr14 41275174 41289435 uncharacterized protein nan K08479
gene-evm.TU.Chr14.1320 rna-evm.model.Chr14.1320.1 Chr14 41307473 41320660 PREDICTED: Guanylate-binding protein 1 GO:0003924;GO:0005525 K20899
gene-evm.TU.Chr14.1321_evm.TU.Chr14.1320 rna-evm.model.Chr14.1321_evm.model.Chr14.1320 Chr14 41298919 41322384 PREDICTED: Guanylate-binding protein 3 GO:0003924;GO:0005525 K20899
gene-evm.TU.Chr14.1322 rna-evm.model.Chr14.1322 Chr14 41357051 41417180 PREDICTED: Low-density lipoprotein receptor-related protein 2 GO:0005515 K24498
gene-evm.TU.Chr14.1323 rna-evm.model.Chr14.1323 Chr14 41475253 41479492 PREDICTED: trichohyalin nan K23718
gene-evm.TU.Chr14.1325 rna-evm.model.Chr14.1325 Chr14 41569125 41577387 PREDICTED: selectin, platele nan K11540
gene-evm.TU.Chr14.1326 rna-evm.model.Chr14.1326 Chr14 41675358 41675546 PREDICTED: exodeoxyribonuclease III [EC:3.1.11.2] nan K20616
gene-evm.TU.Chr14.1327 rna-evm.model.Chr14.1327 Chr14 41724331 41748311 PREDICTED: Gamma-aminobutyric acid type B receptor subunit 1 GO:0004930;GO:0004965;GO:0007186;GO:0016020 K04615
gene-evm.TU.Chr14.1329 rna-evm.model.Chr14.1329 Chr14 41866059 41870401 PREDICTED: leucine-rich repeat protein SHOC2 nan K18545

For more detailed data, you can explore the Download section to access the full dataset.