CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr14.1232 rna-evm.model.Chr14.1232 Chr14 37930872 37982169 PREDICTED: Low-density lipoprotein receptor-related protein 2 GO:0005515 K24498
gene-evm.TU.Chr14.1233 rna-evm.model.Chr14.1233 Chr14 37990770 37993522 PREDICTED: G-protein coupled receptor GRL101 nan K04307
gene-evm.TU.Chr14.1234 rna-evm.model.Chr14.1234 Chr14 37998499 38047882 PREDICTED: Low-density lipoprotein receptor-related protein 2 GO:0005515 K24498
gene-evm.TU.Chr14.1235 rna-evm.model.Chr14.1235 Chr14 38074461 38076582 PREDICTED: Collectin-12 nan K10059
gene-evm.TU.Chr14.1236 rna-evm.model.Chr14.1236 Chr14 38089799 38135304 PREDICTED: DBH-like monooxygenase protein 1 homolog GO:0004497;GO:0005507;GO:0016715;GO:0055114 K00503
gene-evm.TU.Chr14.1238 rna-evm.model.Chr14.1238 Chr14 38157521 38157862 PREDICTED: Tigger transposable element-derived protein 4 GO:0003676 K11496
gene-evm.TU.Chr14.124 rna-evm.model.Chr14.124 Chr14 3880263 3938677 PREDICTED: Neurotrypsin GO:0003676;GO:0004222;GO:0004252;GO:0005044;GO:0005515;GO:0006508;GO:0008237;GO:0008270;GO:0016020 K23489
gene-evm.TU.Chr14.1241 rna-evm.model.Chr14.1241 Chr14 38258723 38350785 PREDICTED: CD320 antigen GO:0005515 K17253
gene-evm.TU.Chr14.1244 rna-evm.model.Chr14.1244 Chr14 38382291 38394249 uncharacterized protein nan nan
gene-evm.TU.Chr14.1245 rna-evm.model.Chr14.1245 Chr14 38401000 38406043 PREDICTED: Flavin-containing monooxygenase FMO GS-OX-like 9 GO:0004499;GO:0050660;GO:0050661;GO:0055114 K18277

For more detailed data, you can explore the Download section to access the full dataset.