CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr14.133 rna-evm.model.Chr14.133 Chr14 4598540 4672610 PREDICTED: Neurotrypsin GO:0004222;GO:0004252;GO:0004867;GO:0005044;GO:0006508;GO:0008237;GO:0008270;GO:0016020 K23489
gene-evm.TU.Chr14.1333 rna-evm.model.Chr14.1333 Chr14 41918051 41918263 uncharacterized protein nan nan
gene-evm.TU.Chr14.1334 rna-evm.model.Chr14.1334 Chr14 41918344 41919345 PREDICTED: deleted in malignant brain tumors 1 protein GO:0055114 nan
gene-evm.TU.Chr14.1335 rna-evm.model.Chr14.1335 Chr14 41919372 41922562 uncharacterized protein nan nan
gene-evm.TU.Chr14.1338 rna-evm.model.Chr14.1338 Chr14 42055092 42056438 PREDICTED: protein kinase D [EC:2.7.11.13] nan K22804
gene-evm.TU.Chr14.134 rna-evm.model.Chr14.134 Chr14 4678676 4679428 PREDICTED: organic solute transporter subunit alpha GO:0003676;GO:0008270 K09250
gene-evm.TU.Chr14.1341 rna-evm.model.Chr14.1341 Chr14 42312600 42322538 PREDICTED: Apolipoprotein F nan K25363
gene-evm.TU.Chr14.1342 rna-evm.model.Chr14.1342 Chr14 42325170 42328854 PREDICTED: CD209 antigen nan K06563
gene-evm.TU.Chr14.1343 rna-evm.model.Chr14.1343 Chr14 42332348 42333088 PREDICTED: Protein SON nan K10184
gene-evm.TU.Chr14.1344 rna-evm.model.Chr14.1344 Chr14 42333723 42334631 PREDICTED: Protein SON nan K08388

For more detailed data, you can explore the Download section to access the full dataset.