CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr14.1246 rna-evm.model.Chr14.1246 Chr14 38412822 38416113 PREDICTED: Senecionine N-oxygenase GO:0004499;GO:0050660;GO:0050661;GO:0055114 K18277
gene-evm.TU.Chr14.1247 rna-evm.model.Chr14.1247 Chr14 38420608 38424429 PREDICTED: Senecionine N-oxygenase GO:0004499;GO:0050660;GO:0050661;GO:0055114 K18277
gene-evm.TU.Chr14.1248_evm.TU.Chr14.1249 rna-evm.model.Chr14.1248_evm.model.Chr14.1249 Chr14 38429361 38449899 PREDICTED: Cilia- and flagella-associated protein 77 nan nan
gene-evm.TU.Chr14.125 rna-evm.model.Chr14.125 Chr14 3942018 3967136 PREDICTED: Complement receptor type 2 nan K04006
gene-evm.TU.Chr14.1250 rna-evm.model.Chr14.1250 Chr14 38454963 38467372 PREDICTED: Notch 2 nan K16680
gene-evm.TU.Chr14.1251 rna-evm.model.Chr14.1251 Chr14 38476486 38488473 PREDICTED: Notch 2 nan K10077
gene-evm.TU.Chr14.1252 rna-evm.model.Chr14.1252 Chr14 38493115 38509324 PREDICTED: ATP-dependent RNA helicase A protein GO:0004386 K13184
gene-evm.TU.Chr14.1253 rna-evm.model.Chr14.1253 Chr14 38509341 38534048 PREDICTED: ATP-dependent RNA helicase A protein GO:0003676;GO:0005524 K13184
gene-evm.TU.Chr14.1254 rna-evm.model.Chr14.1254 Chr14 38557447 38620137 PREDICTED: SUN domain-containing ossification factor nan K01528
gene-evm.TU.Chr14.1255 rna-evm.model.Chr14.1255 Chr14 38627951 38636279 uncharacterized protein nan K09976

For more detailed data, you can explore the Download section to access the full dataset.