CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr14.1259 rna-evm.model.Chr14.1259 Chr14 38672782 38675883 PREDICTED: mucin-5AC nan K10955
gene-evm.TU.Chr14.126 rna-evm.model.Chr14.126 Chr14 4014788 4015380 uncharacterized protein nan nan
gene-evm.TU.Chr14.1262 rna-evm.model.Chr14.1262 Chr14 38699437 38711589 PREDICTED: Phosphatidylinositol N-acetylglucosaminyltransferase subunit C GO:0006506;GO:0016020;GO:0017176 K03859
gene-evm.TU.Chr14.1264 rna-evm.model.Chr14.1264 Chr14 38727847 38737959 PREDICTED: Cilia- and flagella-associated protein 157 GO:0005929 K25609
gene-evm.TU.Chr14.1265 rna-evm.model.Chr14.1265 Chr14 38740664 38744732 PREDICTED: Probable peptidyl-tRNA hydrolase GO:0004045 K01056
gene-evm.TU.Chr14.1266 rna-evm.model.Chr14.1266 Chr14 38744851 38753179 PREDICTED: Estradiol 17-beta-dehydrogenase 8 nan K13370
gene-evm.TU.Chr14.1267 rna-evm.model.Chr14.1267 Chr14 38756282 38771281 PREDICTED: Putative tyrosinase-like protein tyr-3 GO:0016491 K00505
gene-evm.TU.Chr14.1268 rna-evm.model.Chr14.1268 Chr14 38773913 38791084 PREDICTED: Cell division cycle 7-related protein kinase GO:0004672;GO:0005524;GO:0006468 K02214
gene-evm.TU.Chr14.1269 rna-evm.model.Chr14.1269 Chr14 38809034 38886457 PREDICTED: Transforming growth factor beta receptor type 3 nan K05843
gene-evm.TU.Chr14.1271 rna-evm.model.Chr14.1271 Chr14 38899212 38936434 uncharacterized protein GO:0003839 K00682

For more detailed data, you can explore the Download section to access the full dataset.