CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr14.1345 rna-evm.model.Chr14.1345 Chr14 42345894 42366766 PREDICTED: Collagen alpha-3(VI) chain nan K06558
gene-evm.TU.Chr14.1346 rna-evm.model.Chr14.1346 Chr14 42378499 42383972 PREDICTED: Scavenger receptor class A member 5 nan K10062
gene-evm.TU.Chr14.1348 rna-evm.model.Chr14.1348 Chr14 42395995 42403388 uncharacterized protein nan nan
gene-evm.TU.Chr14.1349 rna-evm.model.Chr14.1349 Chr14 42411421 42412904 uncharacterized protein nan K25411
gene-evm.TU.Chr14.1350 rna-evm.model.Chr14.1350 Chr14 42417412 42427682 PREDICTED: IgGFc-binding protein nan K06846
gene-evm.TU.Chr14.1351 rna-evm.model.Chr14.1351 Chr14 42441024 42451280 PREDICTED: Exosome complex component RRP4 GO:0000178;GO:0003723 K03679
gene-evm.TU.Chr14.1355 rna-evm.model.Chr14.1355 Chr14 42515605 42516783 PREDICTED: Rhodopsin GO:0004930;GO:0007186;GO:0016020 K04214
gene-evm.TU.Chr14.1356 rna-evm.model.Chr14.1356 Chr14 42519781 42549577 PREDICTED: 17-beta-hydroxysteroid dehydrogenase 14 nan K18009
gene-evm.TU.Chr14.1357 rna-evm.model.Chr14.1357 Chr14 42552281 42568190 PREDICTED: 17-beta-hydroxysteroid dehydrogenase 14 nan K18009
gene-evm.TU.Chr14.1358 rna-evm.model.Chr14.1358 Chr14 42571293 42584488 PREDICTED: Endothelial differentiation-related factor 1 homolog nan K03627

For more detailed data, you can explore the Download section to access the full dataset.