CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr14.1292 rna-evm.model.Chr14.1292 Chr14 40044885 40045621 PREDICTED: solute carrier family 15, member 5 nan nan
gene-evm.TU.Chr14.1293 rna-evm.model.Chr14.1293 Chr14 40151590 40159773 PREDICTED: Growth hormone secretagogue receptor type 1 GO:0004930;GO:0007186;GO:0016020 K08428
gene-evm.TU.Chr14.1295 rna-evm.model.Chr14.1295 Chr14 40208503 40214419 PREDICTED: exonuclease 1 [EC:3.1.-.-] nan K25972
gene-evm.TU.Chr14.1297 rna-evm.model.Chr14.1297 Chr14 40442203 40446648 PREDICTED: proenkephalin nan K26204
gene-evm.TU.Chr14.1298 rna-evm.model.Chr14.1298 Chr14 40534612 40536699 PREDICTED: glycine-rich cell wall structural protein-like nan nan
gene-evm.TU.Chr14.1299 rna-evm.model.Chr14.1299 Chr14 40539924 40573712 PREDICTED: collagen, type VIII, alpha nan nan
gene-evm.TU.Chr14.130 rna-evm.model.Chr14.130 Chr14 4341366 4381594 PREDICTED: Sushi, von Willebrand factor type A, EGF and pentraxin domain-containing protein 1 GO:0005515 K24469
gene-evm.TU.Chr14.1300 rna-evm.model.Chr14.1300 Chr14 40580940 40584150 PREDICTED: collagen, type VIII, alpha nan nan
gene-evm.TU.Chr14.1302 rna-evm.model.Chr14.1302 Chr14 40593508 40602073 PREDICTED: G-protein coupled receptor GRL101 GO:0004930;GO:0005515;GO:0007186;GO:0016020 K04307
gene-evm.TU.Chr14.1303 rna-evm.model.Chr14.1303 Chr14 40616206 40629180 PREDICTED: Muscle, skeletal receptor tyrosine protein kinase nan K01315

For more detailed data, you can explore the Download section to access the full dataset.