CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr14.1272 rna-evm.model.Chr14.1272 Chr14 38951107 38963110 PREDICTED: N(G),N(G)-dimethylarginine dimethylaminohydrolase 1 nan K01482
gene-evm.TU.Chr14.1273 rna-evm.model.Chr14.1273 Chr14 38965649 38969487 PREDICTED: Lactose-binding lectin l-2 nan K06468
gene-evm.TU.Chr14.128_evm.TU.Chr14.127_evm.TU.Chr14.129 rna-evm.model.Chr14.128_evm.model.Chr14.127_evm.model.Chr14.129 Chr14 4028640 4326271 PREDICTED: Transmembrane protease serine 11D GO:0004252;GO:0005515;GO:0006508 K01335
gene-evm.TU.Chr14.1280 rna-evm.model.Chr14.1280 Chr14 39602721 39607804 PREDICTED: Putative nuclease HARBI1 nan K23222
gene-evm.TU.Chr14.1281 rna-evm.model.Chr14.1281 Chr14 39630292 39632328 uncharacterized protein nan K22904
gene-evm.TU.Chr14.1282 rna-evm.model.Chr14.1282 Chr14 39632584 39635329 uncharacterized protein nan nan
gene-evm.TU.Chr14.1283 rna-evm.model.Chr14.1283 Chr14 39635842 39642953 PREDICTED: transcription termination factor 1 nan K24286
gene-evm.TU.Chr14.1286 rna-evm.model.Chr14.1286 Chr14 39803194 39804201 PREDICTED: BRISC and BRCA1-A complex member 1 nan K06666
gene-evm.TU.Chr14.1287 rna-evm.model.Chr14.1287 Chr14 39863778 39864134 uncharacterized protein nan K10054
gene-evm.TU.Chr14.1288 rna-evm.model.Chr14.1288 Chr14 39864173 39869514 PREDICTED: DNA polymerase III PolC-type nan K10790

For more detailed data, you can explore the Download section to access the full dataset.