CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr14.1220 rna-evm.model.Chr14.1220 Chr14 37679282 37687137 PREDICTED: Steroid 17-alpha-hydroxylase/17,20 lyase GO:0005506;GO:0016705;GO:0020037;GO:0055114 K00512
gene-evm.TU.Chr14.1222 rna-evm.model.Chr14.1222 Chr14 37728333 37729636 uncharacterized protein nan K05409
gene-evm.TU.Chr14.1223 rna-evm.model.Chr14.1223 Chr14 37735327 37736418 PREDICTED: Cysteinyl leukotriene receptor 1 GO:0004930;GO:0007186;GO:0016020 K08428
gene-evm.TU.Chr14.1224 rna-evm.model.Chr14.1224 Chr14 37746750 37748932 uncharacterized protein nan nan
gene-evm.TU.Chr14.1225 rna-evm.model.Chr14.1225 Chr14 37756483 37798169 PREDICTED: GTPase-activating protein and VPS9 domain-containing protein 1 GO:0043087 K20131
gene-evm.TU.Chr14.1228 rna-evm.model.Chr14.1228 Chr14 37816406 37847501 PREDICTED: Cyclic AMP-dependent transcription factor ATF-6 beta GO:0003700;GO:0006355 K09049
gene-evm.TU.Chr14.1229 rna-evm.model.Chr14.1229 Chr14 37858174 37880960 PREDICTED: Coiled-coil domain-containing protein 151 GO:0003341;GO:0005929;GO:0070286 K23733
gene-evm.TU.Chr14.123 rna-evm.model.Chr14.123 Chr14 3863585 3870347 PREDICTED: Toll-like receptor 1 GO:0005515;GO:0007165 K10169
gene-evm.TU.Chr14.1230 rna-evm.model.Chr14.1230 Chr14 37881026 37892798 PREDICTED: DNA repair protein SWI5 homolog nan K10991
gene-evm.TU.Chr14.1231 rna-evm.model.Chr14.1231 Chr14 37901695 37929005 uncharacterized protein nan K26162

For more detailed data, you can explore the Download section to access the full dataset.