CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr14.119 rna-evm.model.Chr14.119.1 Chr14 3760607 3770932 PREDICTED: E3 SUMO-protein ligase ZNF451 nan K25176
gene-evm.TU.Chr14.1190 rna-evm.model.Chr14.1190 Chr14 37207571 37210265 PREDICTED: Cytochrome P450 1A1 GO:0005506;GO:0016705;GO:0020037;GO:0055114 K07408
gene-evm.TU.Chr14.1191 rna-evm.model.Chr14.1191 Chr14 37210617 37218763 PREDICTED: Lactose-binding lectin l-2 nan K06468
gene-evm.TU.Chr14.1192 rna-evm.model.Chr14.1192 Chr14 37224962 37229535 PREDICTED: Sushi repeat-containing protein SRPX2 nan K19408
gene-evm.TU.Chr14.1193 rna-evm.model.Chr14.1193 Chr14 37230118 37244028 PREDICTED: Sushi, von Willebrand factor type A, EGF and pentraxin domain-containing protein 1 GO:0005509 K24469
gene-evm.TU.Chr14.1194 rna-evm.model.Chr14.1194 Chr14 37245659 37264816 PREDICTED: Macrophage mannose receptor 1 nan K06560
gene-evm.TU.Chr14.1195 rna-evm.model.Chr14.1195 Chr14 37265863 37268184 PREDICTED: Alpha-protein kinase vwkA nan K24511
gene-evm.TU.Chr14.1196 rna-evm.model.Chr14.1196 Chr14 37272871 37274429 PREDICTED: Alpha-protein kinase vwkA nan K24511
gene-evm.TU.Chr14.1197 rna-evm.model.Chr14.1197 Chr14 37282611 37284290 PREDICTED: Alpha-protein kinase vwkA nan K24511
gene-evm.TU.Chr14.1198 rna-evm.model.Chr14.1198 Chr14 37294580 37296329 PREDICTED: Alpha-protein kinase vwkA nan K24511

For more detailed data, you can explore the Download section to access the full dataset.