CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr14.1169 rna-evm.model.Chr14.1169 Chr14 36672391 36712067 PREDICTED: E3 ubiquitin-protein ligase UBR4 nan K10691
gene-evm.TU.Chr14.117 rna-evm.model.Chr14.117 Chr14 3729463 3735588 PREDICTED: Aggrecan core protein nan K06468
gene-evm.TU.Chr14.1170 rna-evm.model.Chr14.1170 Chr14 36718038 36733724 PREDICTED: Neurogenic locus notch homolog protein 2 GO:0005509 K16681
gene-evm.TU.Chr14.1171 rna-evm.model.Chr14.1171 Chr14 36792447 36809548 PREDICTED: Sushi repeat-containing protein SRPX GO:0005509 K24469
gene-evm.TU.Chr14.1172 rna-evm.model.Chr14.1172 Chr14 36823393 36838433 PREDICTED: Sushi, von Willebrand factor type A, EGF and pentraxin domain-containing protein 1 GO:0005509 K24468
gene-evm.TU.Chr14.1174 rna-evm.model.Chr14.1174 Chr14 36887881 36890807 uncharacterized protein nan nan
gene-evm.TU.Chr14.1175 rna-evm.model.Chr14.1175 Chr14 36903844 36938940 PREDICTED: GTPase IMAP family member 9 GO:0005525 K06946
gene-evm.TU.Chr14.1176 rna-evm.model.Chr14.1176 Chr14 36941629 36947421 PREDICTED: GTPase IMAP family member 9 GO:0005525 K06946
gene-evm.TU.Chr14.1178 rna-evm.model.Chr14.1178 Chr14 36954000 36957770 PREDICTED: GTPase IMAP family member 4 GO:0005525 nan
gene-evm.TU.Chr14.1179 rna-evm.model.Chr14.1179 Chr14 36961218 36978627 PREDICTED: Fatty acid synthase GO:0016491 K00665

For more detailed data, you can explore the Download section to access the full dataset.