CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr14.1157 rna-evm.model.Chr14.1157 Chr14 36359567 36364393 PREDICTED: Perlucin-like protein nan K06468
gene-evm.TU.Chr14.1159 rna-evm.model.Chr14.1159 Chr14 36385126 36391871 PREDICTED: Perlucin-like protein nan K06468
gene-evm.TU.Chr14.116 rna-evm.model.Chr14.116 Chr14 3707785 3723201 PREDICTED: tripartite motif-containing protein 2/3 nan K10642
gene-evm.TU.Chr14.1160 rna-evm.model.Chr14.1160 Chr14 36399103 36406538 PREDICTED: Perlucin-like protein nan K06468
gene-evm.TU.Chr14.1162 rna-evm.model.Chr14.1162 Chr14 36417005 36419273 PREDICTED: nuclease HARBI1 [EC:3.1.-.-] nan K23222
gene-evm.TU.Chr14.1164 rna-evm.model.Chr14.1164 Chr14 36430794 36453937 PREDICTED: Perlucin-like protein nan K06468
gene-evm.TU.Chr14.1165 rna-evm.model.Chr14.1165 Chr14 36457244 36458554 PREDICTED: poly [ADP-ribose] polymerase 7/11/12/13 [EC:2.4.2.30] nan K04064
gene-evm.TU.Chr14.1166 rna-evm.model.Chr14.1166 Chr14 36467016 36470225 uncharacterized protein nan K13914
gene-evm.TU.Chr14.1167 rna-evm.model.Chr14.1167.1 Chr14 36507990 36533115 PREDICTED: LIM homeobox transcription factor 1-beta.1 GO:0003677 K09371
gene-evm.TU.Chr14.1168 rna-evm.model.Chr14.1168 Chr14 36566419 36643975 PREDICTED: E3 ubiquitin-protein ligase UBR4 GO:0008270 K10691

For more detailed data, you can explore the Download section to access the full dataset.