CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr14.1145 rna-evm.model.Chr14.1145 Chr14 36091737 36100679 PREDICTED: Polyadenylate-binding protein 2 GO:0003676 K14396
gene-evm.TU.Chr14.1146 rna-evm.model.Chr14.1146 Chr14 36104068 36111171 PREDICTED: Carbohydrate sulfotransferase 14 GO:0008146;GO:0016020;GO:0016051 K01017
gene-evm.TU.Chr14.1147 rna-evm.model.Chr14.1147 Chr14 36111473 36112570 PREDICTED: Beta-1,3-galactosyltransferase 1 GO:0006486;GO:0008378;GO:0016020 K07819
gene-evm.TU.Chr14.1148 rna-evm.model.Chr14.1148 Chr14 36127130 36136132 PREDICTED: RB1-inducible coiled-coil protein 1-like GO:0005515;GO:0007165 K06674
gene-evm.TU.Chr14.1149 rna-evm.model.Chr14.1149 Chr14 36142188 36192402 PREDICTED: Valine--tRNA ligase GO:0000166;GO:0004812;GO:0004832;GO:0005524;GO:0006418;GO:0006438 K01873
gene-evm.TU.Chr14.1150 rna-evm.model.Chr14.1150 Chr14 36192439 36209245 PREDICTED: General transcription factor IIH subunit 4 GO:0000439;GO:0001671;GO:0006289 K03144
gene-evm.TU.Chr14.1151 rna-evm.model.Chr14.1151 Chr14 36217438 36220832 uncharacterized protein nan nan
gene-evm.TU.Chr14.1152 rna-evm.model.Chr14.1152 Chr14 36228312 36259235 PREDICTED: Echinoderm microtubule-associated protein-like 2 GO:0005515 K18595
gene-evm.TU.Chr14.1154 rna-evm.model.Chr14.1154 Chr14 36274297 36331610 PREDICTED: Influenza virus NS1A-binding protein homolog B GO:0005515;GO:0016567;GO:0031463 K15046
gene-evm.TU.Chr14.1155 rna-evm.model.Chr14.1155 Chr14 36338982 36340697 PREDICTED: Perlucin nan K06468

For more detailed data, you can explore the Download section to access the full dataset.