CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr14.1136 rna-evm.model.Chr14.1136 Chr14 35911492 35923741 PREDICTED: Protein ABHD14A nan K13706
gene-evm.TU.Chr14.1137 rna-evm.model.Chr14.1137 Chr14 35929454 35945610 PREDICTED: Guanine nucleotide-binding protein-like 1 GO:0005525 K14539
gene-evm.TU.Chr14.1138 rna-evm.model.Chr14.1138 Chr14 35960482 35968678 PREDICTED: Protein-glucosylgalactosylhydroxylysine glucosidase GO:0003824;GO:0005975 K22078
gene-evm.TU.Chr14.1139 rna-evm.model.Chr14.1139 Chr14 35984998 36029551 PREDICTED: Tyrosine-protein kinase ABL1 GO:0004672;GO:0004713;GO:0004715;GO:0005515;GO:0005524;GO:0006468 K06619
gene-evm.TU.Chr14.114 rna-evm.model.Chr14.114 Chr14 3663996 3664577 uncharacterized protein nan K10804
gene-evm.TU.Chr14.1140 rna-evm.model.Chr14.1140 Chr14 36034080 36042440 PREDICTED: Casein kinase II subunit beta GO:0005956;GO:0019887 K03115
gene-evm.TU.Chr14.1141 rna-evm.model.Chr14.1141 Chr14 36046486 36052210 PREDICTED: Glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 GO:0016020;GO:0016263;GO:0016266;GO:0016757 K00731
gene-evm.TU.Chr14.1142 rna-evm.model.Chr14.1142 Chr14 36055576 36062156 PREDICTED: Homeobox protein aristaless GO:0003677 K09452
gene-evm.TU.Chr14.1143 rna-evm.model.Chr14.1143 Chr14 36071797 36076478 PREDICTED: Carbohydrate sulfotransferase 11 GO:0008146;GO:0016020;GO:0016051 K07779
gene-evm.TU.Chr14.1144 rna-evm.model.Chr14.1144 Chr14 36082327 36086153 PREDICTED: Collagen alpha-1(VIII) chain nan K23284

For more detailed data, you can explore the Download section to access the full dataset.