CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.1973 rna-evm.model.Chr1.1973 Chr1 62787328 62788839 PREDICTED: Glutaredoxin-2 GO:0009055;GO:0015035;GO:0045454 K03676
gene-evm.TU.Chr1.1974 rna-evm.model.Chr1.1974 Chr1 62802273 62839336 uncharacterized protein nan K18545
gene-evm.TU.Chr1.1975 rna-evm.model.Chr1.1975 Chr1 62863918 62915817 PREDICTED: WD repeat-containing protein on Y chromosome GO:0005509;GO:0005515 K24747
gene-evm.TU.Chr1.1976 rna-evm.model.Chr1.1976 Chr1 62963946 62970208 PREDICTED: cytochrome c oxidase assembly factor 6 nan K01245
gene-evm.TU.Chr1.1977 rna-evm.model.Chr1.1977 Chr1 62982818 63023039 PREDICTED: Netrin receptor UNC5A nan K24433
gene-evm.TU.Chr1.1979 rna-evm.model.Chr1.1979 Chr1 63032890 63033612 PREDICTED: BTB/POZ domain-containing protein KCTD1/15 nan K21754
gene-evm.TU.Chr1.198 rna-evm.model.Chr1.198 Chr1 6112760 6114910 PREDICTED: Nocturnin GO:0004535;GO:0032922 K18764
gene-evm.TU.Chr1.1980 rna-evm.model.Chr1.1980 Chr1 63074273 63090644 PREDICTED: 5-hydroxyisourate hydrolase nan K07127
gene-evm.TU.Chr1.1981 rna-evm.model.Chr1.1981 Chr1 63099024 63119742 PREDICTED: Zinc finger protein 235 GO:0003676 K09230
gene-evm.TU.Chr1.1982 rna-evm.model.Chr1.1982 Chr1 63119758 63120477 PREDICTED: kinesin family member 6/9 nan K11496

For more detailed data, you can explore the Download section to access the full dataset.