CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.1983 rna-evm.model.Chr1.1983 Chr1 63120513 63121659 PREDICTED: Tigger transposable element-derived protein 6 GO:0003676 K11496
gene-evm.TU.Chr1.1986 rna-evm.model.Chr1.1986.2 Chr1 63300775 63312586 uncharacterized protein nan K03529
gene-evm.TU.Chr1.1987 rna-evm.model.Chr1.1987 Chr1 63314951 63316581 PREDICTED: Notch 2 nan K09006
gene-evm.TU.Chr1.1988 rna-evm.model.Chr1.1988 Chr1 63322683 63365817 PREDICTED: Sister chromatid cohesion protein PDS5 homolog B GO:0007064 K11267
gene-evm.TU.Chr1.1989 rna-evm.model.Chr1.1989 Chr1 63368050 63369678 PREDICTED: G-protein coupled receptor 161 GO:0004930;GO:0007186;GO:0016020 K08423
gene-evm.TU.Chr1.199 rna-evm.model.Chr1.199 Chr1 6120720 6121103 uncharacterized protein nan K01634
gene-evm.TU.Chr1.1991 rna-evm.model.Chr1.1991 Chr1 63397754 63446787 PREDICTED: Krueppel-like factor 12 GO:0003676 K15605
gene-evm.TU.Chr1.1992 rna-evm.model.Chr1.1992 Chr1 63463093 63473626 PREDICTED: Leucine-rich repeat-containing protein 51 GO:0005515 K11092
gene-evm.TU.Chr1.1993 rna-evm.model.Chr1.1993 Chr1 63474744 63492386 PREDICTED: Alpha-N-acetylgalactosaminidase GO:0004553;GO:0005975 K01204
gene-evm.TU.Chr1.1994 rna-evm.model.Chr1.1994 Chr1 63525750 63546814 PREDICTED: PAN2-PAN3 deadenylation complex subunit pan3 GO:0000289;GO:0003723;GO:0004672;GO:0005524;GO:0006397;GO:0006468;GO:0031251;GO:0046872 K12572

For more detailed data, you can explore the Download section to access the full dataset.