CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr14.1113 rna-evm.model.Chr14.1113 Chr14 35591531 35618919 PREDICTED: Coiled-coil domain-containing protein 151 GO:0003341;GO:0005929;GO:0070286 K23733
gene-evm.TU.Chr14.1114 rna-evm.model.Chr14.1114 Chr14 35627199 35665852 PREDICTED: Cyclic AMP-dependent transcription factor ATF-6 beta GO:0003700;GO:0006355 K09049
gene-evm.TU.Chr14.1116 rna-evm.model.Chr14.1116 Chr14 35676038 35732593 PREDICTED: GTPase-activating protein and VPS9 domain-containing protein 1 GO:0043087 K20131
gene-evm.TU.Chr14.1117 rna-evm.model.Chr14.1117 Chr14 35738791 35740486 PREDICTED: glucuronosyltransferase [EC:2.4.1.17] GO:0003677;GO:0006310;GO:0015074 K04763
gene-evm.TU.Chr14.1118 rna-evm.model.Chr14.1118 Chr14 35741459 35742859 uncharacterized protein nan K14978
gene-evm.TU.Chr14.1120 rna-evm.model.Chr14.1120 Chr14 35760352 35761443 PREDICTED: Cysteinyl leukotriene receptor 1 GO:0004930;GO:0007186;GO:0016020 K04284
gene-evm.TU.Chr14.1121 rna-evm.model.Chr14.1121 Chr14 35773046 35784623 uncharacterized protein nan K05409
gene-evm.TU.Chr14.1122 rna-evm.model.Chr14.1122 Chr14 35790797 35799724 PREDICTED: Leucine-rich repeat-containing protein 74A GO:0005509;GO:0005515 K10165
gene-evm.TU.Chr14.1123 rna-evm.model.Chr14.1123 Chr14 35801138 35801852 PREDICTED: Solute carrier family 49 member 4 homolog nan K15381
gene-evm.TU.Chr14.1124 rna-evm.model.Chr14.1124 Chr14 35808198 35808542 PREDICTED: MFS transporter, FLVCR family, disrupted in renal carcinoma protein 2 nan K15381

For more detailed data, you can explore the Download section to access the full dataset.