CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr14.110 rna-evm.model.Chr14.110 Chr14 3622455 3623051 PREDICTED: exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-] nan nan
gene-evm.TU.Chr14.1100 rna-evm.model.Chr14.1100 Chr14 35109819 35142571 uncharacterized protein nan K05163
gene-evm.TU.Chr14.1104 rna-evm.model.Chr14.1104 Chr14 35332419 35347245 PREDICTED: DBH-like monooxygenase protein 1 homolog GO:0004497;GO:0005507;GO:0016715;GO:0055114 K00503
gene-evm.TU.Chr14.1105 rna-evm.model.Chr14.1105 Chr14 35348318 35355646 PREDICTED: DBH-like monooxygenase protein 1 homolog GO:0004497;GO:0005507;GO:0016715;GO:0055114 K00503
gene-evm.TU.Chr14.1107 rna-evm.model.Chr14.1107 Chr14 35371199 35378331 PREDICTED: DBH-like monooxygenase protein 1 homolog GO:0004497;GO:0005507;GO:0016715;GO:0055114 K00503
gene-evm.TU.Chr14.1108 rna-evm.model.Chr14.1108 Chr14 35393508 35431134 PREDICTED: Aggrecan core protein nan K10059
gene-evm.TU.Chr14.1109 rna-evm.model.Chr14.1109 Chr14 35432074 35472775 PREDICTED: Very low-density lipoprotein receptor GO:0005515 K24498
gene-evm.TU.Chr14.111 rna-evm.model.Chr14.111 Chr14 3626237 3649013 PREDICTED: TNF receptor-associated factor 2 GO:0005164;GO:0005515;GO:0005829;GO:0008270;GO:0033209;GO:0046872 K03173
gene-evm.TU.Chr14.1111 rna-evm.model.Chr14.1111 Chr14 35507561 35552237 PREDICTED: Low-density lipoprotein receptor-related protein 2 GO:0005515 K24498
gene-evm.TU.Chr14.1112 rna-evm.model.Chr14.1112 Chr14 35576253 35584737 PREDICTED: DNA repair protein SWI5 homolog nan K10991

For more detailed data, you can explore the Download section to access the full dataset.