CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr14.1046 rna-evm.model.Chr14.1046 Chr14 33571392 33618749 PREDICTED: High affinity copper uptake protein 1 GO:0005375;GO:0016020;GO:0035434 K14686
gene-evm.TU.Chr14.1047 rna-evm.model.Chr14.1047 Chr14 33620494 33654669 PREDICTED: Abnormal spindle-like microcephaly-associated protein homolog GO:0005515;GO:0007051 K16743
gene-evm.TU.Chr14.1048 rna-evm.model.Chr14.1048 Chr14 33657366 33659913 PREDICTED: Ankyrin repeat domain-containing protein 54 GO:0005515 K21442
gene-evm.TU.Chr14.1049 rna-evm.model.Chr14.1049 Chr14 33681674 33718173 PREDICTED: Cdc42-interacting protein 4 homolog GO:0005515 K20121
gene-evm.TU.Chr14.105 rna-evm.model.Chr14.105 Chr14 3511530 3514162 PREDICTED: DNA-directed RNA polymerase I subunit RPA12 GO:0003676;GO:0006351;GO:0008270 K03000
gene-evm.TU.Chr14.1050 rna-evm.model.Chr14.1050 Chr14 33736301 33783851 PREDICTED: Calcium-binding mitochondrial carrier protein SCaMC-2 GO:0005509;GO:0005743;GO:0022857;GO:0055085 K14684
gene-evm.TU.Chr14.1051 rna-evm.model.Chr14.1051 Chr14 33783888 33791103 PREDICTED: Uncharacterized protein ZK546.14 nan K25065
gene-evm.TU.Chr14.1052 rna-evm.model.Chr14.1052 Chr14 33801083 33821787 PREDICTED: E3 ubiquitin-protein ligase LRSAM1 GO:0005515 K10641
gene-evm.TU.Chr14.1053 rna-evm.model.Chr14.1053 Chr14 33833961 33849245 PREDICTED: Uricase nan K00365
gene-evm.TU.Chr14.1055_evm.TU.Chr14.1056 rna-evm.model.Chr14.1055_evm.model.Chr14.1056 Chr14 33866319 33874823 PREDICTED: Apical junction component 1 homolog GO:0045216 K24632

For more detailed data, you can explore the Download section to access the full dataset.