CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr14.1058 rna-evm.model.Chr14.1058 Chr14 33914060 33930877 PREDICTED: LIM/homeobox protein Awh GO:0003677 K09375
gene-evm.TU.Chr14.106 rna-evm.model.Chr14.106 Chr14 3516374 3519188 PREDICTED: Multifunctional methyltransferase subunit TRM112-like protein GO:0046982 K15448
gene-evm.TU.Chr14.1060 rna-evm.model.Chr14.1060 Chr14 33946258 33992339 uncharacterized protein nan nan
gene-evm.TU.Chr14.1062 rna-evm.model.Chr14.1062 Chr14 34032932 34039661 PREDICTED: ATP-binding cassette, subfamily C (CFTR/MRP), member 1 [EC:7.6.2.3] nan K11547
gene-evm.TU.Chr14.1065 rna-evm.model.Chr14.1065 Chr14 34080056 34080799 PREDICTED: p24 family protein gamma-2 nan K23285
gene-evm.TU.Chr14.1067 rna-evm.model.Chr14.1067 Chr14 34105477 34138910 PREDICTED: Protein FAM166B nan nan
gene-evm.TU.Chr14.1068 rna-evm.model.Chr14.1068 Chr14 34139294 34172929 PREDICTED: Transient receptor potential cation channel subfamily V member 6 GO:0005216;GO:0005515;GO:0006811;GO:0016020 K04974
gene-evm.TU.Chr14.1069 rna-evm.model.Chr14.1069 Chr14 34185092 34188329 uncharacterized protein nan K27077
gene-evm.TU.Chr14.107 rna-evm.model.Chr14.107 Chr14 3525780 3545730 uncharacterized protein GO:0005515 K16687
gene-evm.TU.Chr14.1070 rna-evm.model.Chr14.1070 Chr14 34202996 34244957 PREDICTED: F-box/WD repeat-containing protein 5 GO:0005515 K10263

For more detailed data, you can explore the Download section to access the full dataset.